PAComplex

Peptide Antigens and TCR-pMHC Complex
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Peptide family
Complex / Interface
Peptide Candidates

Peptide antigen family of TCR-pMHC complex

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Interacting type	:	strong VDW H-bond both* all
Interface	:	MHC TCR
chain color	:	MHC:A TCR:EF

*The both option means the srong VDW and H-bond

**Summary of peptide family of:**
Query	: RMWAFLEKL (Rank 1, position 95)
Template	: ALWGFFPVL (PDB: 2j8u)
MHC allene	: HLAA0201
No. of members	: 66 peptides
No. of organism	: 32

**Peptide Antigen Family of Template 2j8u across Multiple Species**
Rank	Peptide Antigen	Average complex Z-score	Organisms	Source molecule name	Recorded database
1	ALWGFFPVL	7.265	Homo sapiens	chromosome 15 open reading frame 24	IEDB
2	NMVPFFPPV	5.407	Homo sapiens	L-dopachrome tautomerase precursor	IEDB
3	RLVDFFPDI	5.397	Vaccinia virus WR	Major core protein P4a precursor	IEDB
4	RMWEFLDRL	5.132	Mycobacterium tuberculosis	50S ribosomal protein L5	IEDB
5	MLMEVFPQL	5.116	Vaccinia virus WR	Early transcription factor 82 kDa subunit	IEDB
6	NWQYFFPVI	5.031	Homo sapiens	Melanoma-associated antigen 3	IEDB
7	SFWFFHPPY	5.013	Campylobacter jejuni	unknown	IEDB
8	LFHAFFGAL	4.946	Guanarito virus	L protein	IEDB
9	SVYDFFVWL	4.854	Homo sapiens	L-dopachrome tautomerase precursor	IEDB
10	AMTAFFGEL	4.846	Vaccinia virus WR	Late protein H7	IEDB
11	SVMNFIPII	4.827	Vaccinia virus WR	Protein K4	IEDB
12	MAYGFFNNI	4.780	Vibrio parahaemolyticus AQ3810	succinylglutamate desuccinylase/aspartoacylase family protein	IEDB
13	FLYSFFLCI	4.733	Vaccinia virus WR	Protein not available	IEDB
14	GFMRFFQLL	4.716	Vaccinia virus WR	Major core protein P4a precursor	IEDB
15	MMMGMFNML	4.712	Influenza A virus (A/goose/Hong Kong/8/1976(H1N1))	Polymerase	IEDB
16	FFINFFNLL	4.695	Vaccinia virus	Major core protein P4a precursor	IEDB
17	FMFDYIPPV	4.676	Mycobacterium bovis BCG str. Pasteur 1173P2	PROBABLE SUCCINATE DEHYDROGENASE	IEDB
18	MLHNFLPHM	4.629	Vaccinia virus WR	DNA-directed RNA polymerase 132 kDa polypeptide	IEDB
19	IFWQFHQLL	4.573	Francisella tularensis subsp. tularensis SCHU S4	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-me so-diaminopimelate ligase	IEDB
20	AFYGVWPLL	4.552	Hepatitis C virus subtype 1b	polyprotein	IEDB
21	GLFQFFVFL	4.490	Junin virus	Glycoprotein polyprotein	IEDB
22	FMAAFYRVM	4.483	Shigella boydii CDC 3083-94	conserved hypothetical protein	IEDB
23	ILWDYFSLV	4.475	Amapari virus	RNA-dependent RNA polymerase	IEDB
24	VLFEVFVVF	4.455	Vaccinia virus WR	Protein L5	IEDB
25	KQWGWFALL	4.441	Listeria monocytogenes	Lmo2062 protein	IEDB
26	FLWSVFMLI	4.427	Homo sapiens	islet-specific glucose-6-phosphatase-related protein	IEDB
27	LFFQFCPLI	4.427	Human T-cell lymphotrophic virus type 1 (strain ATK)	Envelope glycoprotein gp62 precursor	IEDB
28	VILEYFTRL	4.379	Mus musculus	POP4 (processing of precursor , S. cerevisiae) homolog	IEDB
29	VILNYIPVL	4.372	Staphylococcus aureus subsp. aureus N315	hypothetical protein	IEDB
30	ALRFFLQRL	4.360	Vaccinia virus WR	Intermediate transcription factor 3 small subunit	IEDB
31	RLYDYFTRV	4.347	Vaccinia virus WR	36 kDa late protein I1	IEDB
32	LFWAVKPKI	4.321	Sabia virus	L protein	IEDB
33	HMWNFISGI	4.302	Hepatitis C virus	Genome polyprotein	IEDB
34	ALYGVWPLL	4.293	Hepatitis C virus subtype 1b	polyprotein	IEDB
35	HMWNFITGI	4.292	Hepatitis C virus subtype 1b	Polyprotein	IEDB
36	TVLRFVPPL	4.286	Mycobacterium tuberculosis	3-phosphoshikimate 1-carboxyvinyltransferase	IEDB
37	LPLDFFPDL	4.272	Woodchuck hepatitis virus 8	core protein	IEDB
38	YIYYFFIRL	4.247	Vaccinia virus WR	Probable FAD-linked sulfhydryl oxidase E10	IEDB
39	LLYAFMYYL	4.230	Variola major virus	homolog of vaccinia virus CDS A26L, homolog of vaccinia WR 32.1 kDa protein; putative	IEDB
40	ALVNFLRHL	4.215	Human herpesvirus 5 strain AD169	Large structural phosphoprotein	IEDB
41	SPYNFFKRI	4.204	Vaccinia virus WR	Kelch repeat protein C2	IEDB
42	FRYVFFEII	4.203	Vaccinia virus Copenhagen	Uncharacterized 8.5 kDa protein	IEDB
43	RMYGVLPWI	4.196	Homo sapiens	myelin proteolipid protein	IEDB
44	AVAKYFSPL	4.186	Vaccinia virus WR	Early transcription factor 82 kDa subunit	IEDB
45	ARHGFLPRH	4.186	Homo sapiens	MBP protein	IEDB
46	IMQVFFGYF	4.180	SARS coronavirus Tor2	Replicase polyprotein 1ab	IEDB
47	QIISFFSPL	4.170	Mus musculus	DNA repair protein RAD50	IEDB
48	LLFRFMRPL	4.169	Mycobacterium tuberculosis	DNA gyrase subunit B	IEDB
49	AVVAFVMKM	4.164	Mus musculus	histocompatibility 2, K1, K region isoform 1	IEDB
50	AVHDFFKFR	4.163	SARS coronavirus Tor2	Replicase polyprotein 1ab	IEDB
51	CRTAFKPVL	4.142	Yellow fever virus 17D	Genome polyprotein	IEDB
52	IMRNFLRSI	4.132	Vaccinia virus WR	Protein K4	IEDB
53	MQQGRFPPL	4.129	Yersinia pestis CO92	putative LysR-family transcriptional regulator	IEDB
54	SMWSFNPET	4.129	SARS coronavirus Tor2	Membrane protein	IEDB
55	MLWGYLQYV	4.117	Saccharomyces cerevisiae	telomer length regulation protein TEL1	IEDB
56	KQYKFYNQI	4.111	Vaccinia virus WR	Ankyrin repeat protein C9	IEDB
57	SYNDYFNVL	4.103	Vaccinia virus	DNA-directed RNA polymerase 30 kDa polypeptide	IEDB
58	QLFSFFEEV	4.091	Sabia virus	glycoprotein precursor	IEDB
59	LFTKFFYLL	4.061	SARS coronavirus Tor2	Replicase polyprotein 1ab	IEDB
60	ALIYFLQCI	4.048	SARS coronavirus Tor2	Protein 3a	IEDB
61	TMFEALPHI	4.042	Lymphocytic choriomeningitis virus (strain Armstrong) (clone 53b)	Glycoprotein polyprotein	IEDB
62	AAFEFINSL	4.036	Vaccinia virus WR	Protein A47	IEDB
63	VIFDFLHCI	4.025	BK polyomavirus	large T antigen	IEDB
64	KLKEFIPKV	4.022	Plasmodium falciparum	major merozoite surface antigen	IEDB
65	DLMGYLPLV	4.009	Hepatitis C virus	polyprotein	IEDB
66	ARYAYYLQF	4.000	Human herpesvirus 4 (strain B95-8)	Major DNA-binding protein	IEDB