PAComplex

Peptide Antigens and TCR-pMHC Complex
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Peptide family
Complex / Interface
Peptide Candidates

Peptide antigen family of TCR-pMHC complex

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Interacting type	:	strong VDW H-bond both* all
Interface	:	MHC TCR
chain color	:	MHC:A TCR:HL

*The both option means the srong VDW and H-bond

**Summary of peptide family of:**
Query	: SYQRFRRL (Rank 1, position 4)
Template	: SIINFEKL (PDB: 3cvh)
MHC allene	: H2Kb
No. of members	: 73 peptides
No. of organism	: 21

**Peptide Antigen Family of Template 3cvh across Multiple Species**
Rank	Peptide Antigen	Average complex Z-score	Organisms	Source molecule name	Recorded database
1	SIINFEKL	6.962	Gallus gallus	Ovalbumin	IEDB
2	SSIEFARL	5.678	Human herpesvirus 1	glycoprotein B	IEDB
3	STLNFNNL	5.610	Vaccinia virus WR	Protein E7	IEDB
4	RSIDFERV	5.571	Lymphocytic choriomeningitis virus (strain Armstrong)	RNA-directed RNA polymerase	IEDB
5	SVIKFENL	5.509	Mus musculus	zinc finger, DHHC domain containing 6	IEDB
6	QVVQFNRL	5.429	Mus musculus	MAPK scaffold protein 1	IEDB
7	SSQSFRRL	5.284	Treponema pallidum subsp. pallidum str. Nichols	lipoprotein, 15 kDa (tpp15)	IEDB
8	TMIKFNRL	5.234	Mus musculus	Lupus La protein homolog	IEDB
9	KVVRFDKL	5.179	Gallus gallus	Ovalbumin	IEDB
10	QSIEFSRL	5.116	Mus musculus	eukaryotic translation initiation factor 3, subunit 10 (theta)	IEDB
11	SALDFHKV	5.096	Pichinde virus	Nucleoprotein	IEDB
12	TSINFVKI	5.003	Murid herpesvirus 4	ribonucleotide reductase large	IEDB
13	SYQHFRKL	4.995	Hepatitis B virus	Polymerase	IEDB
14	SALDFVKL	4.989	Mus musculus	NLR family, CARD domain containing 4	IEDB
15	RNYSYEKL	4.970	Mus musculus	junction plakoglobin	IEDB
16	RIDSFFRL	4.953	Mus musculus	excision repair cross-complementing rodent repair deficiency, complementation group 5	IEDB
17	SSMTYEKL	4.946	Mus musculus	ets homologous factor	IEDB
18	KALTYEKL	4.919	Mus musculus	serine (or cysteine) proteinase inhibitor, clade B, member 8	IEDB
19	AVFTFEQL	4.899	Mus musculus	niban protein	IEDB
20	KILTFDQL	4.899	Mus musculus	ribosomal protein L18	IEDB
21	EIVTFERL	4.859	Mus musculus	fragile X mental retardation-related protein 1 isoform 2	IEDB
22	SNPEFRQL	4.835	Mus musculus	jumonji C domain-containing histone demethylase 1 homolog D	IEDB
23	SPASFEKK	4.803	Lymphocytic choriomeningitis virus (strain Armstrong)	RNA-directed RNA polymerase	IEDB
24	CETEFSKL	4.775	Plasmodium falciparum	RAP-2	IEDB
25	SSLPFQNI	4.769	Influenza A virus (A/Leningrad/1954/1(H1N1))	Hemagglutinin precursor	IEDB
26	HIYEFPQL	4.754	Mus musculus	unc-119 homolog B	IEDB
27	RIIDFDNM	4.707	Murid herpesvirus 1	M100 protein	IEDB
28	TSTEYERL	4.651	Lymphocytic choriomeningitis virus (strain Armstrong)	RNA-directed RNA polymerase	IEDB
29	SGYDFSRL	4.635	Mus musculus	SREBF chaperone	IEDB
30	RTYTYEKL	4.627	Mus musculus	beta-catenin	IEDB
31	IILGFRKI	4.604	Hepatitis B virus subtype adyw	P protein	IEDB
32	IMIKFNRL	4.601	Homo sapiens	Lupus La protein	IEDB
33	SSYSFRHL	4.596	Mus musculus	palmitoyl-protein thioesterase 2 precursor	IEDB
34	LEYDFNKL	4.572	Lymphocytic choriomeningitis virus (strain Armstrong)	RNA-directed RNA polymerase	IEDB
35	SSYTFPKM	4.571	Mus musculus	peroxisomal delta3, delta2-enoyl-Coenzyme A isomerase isoform a	IEDB
36	STIEFKNM	4.525	Mus musculus	hypothetical protein LOC75137	IEDB
37	SSMAFKQM	4.490	Mus musculus	transgelin 2	IEDB
38	RTTDFTRL	4.468	Guanarito virus	RNA-directed RNA polymerase	IEDB
39	QTFDFGRL	4.467	Human herpesvirus 1	ribonucleotide reductase 1	IEDB
40	TSVVFNKL	4.466	Mus musculus	nuclear RNA polymerase I small specific subunit	IEDB
41	SFNDFTRV	4.458	Homo sapiens	factor IX	IEDB
42	EIYEFHKM	4.410	Mus musculus	neutrophil cytosolic factor 1	IEDB
43	SGIDFKQL	4.407	Mus musculus	integrin linked kinase	IEDB
44	RSYDFEFM	4.401	Mus musculus	vacuolar protein sorting 26 isoform a	IEDB
45	HAVEFHNL	4.389	Hepatitis B virus subtype ayw	P protein	IEDB
46	SPERFQQI	4.348	Bovine herpesvirus 1	glycoprotein B	IEDB
47	INFDFPKL	4.340	Mus musculus	DEAD (Asp-Glu-Ala-Asp) box polypeptide 6	IEDB
48	AIVNYANL	4.331	Vaccinia virus WR	Protein A11	IEDB
49	QIKNFHEL	4.329	Mus musculus	DNA repair protein RAD50	IEDB
50	KSLTYYKL	4.318	Murid herpesvirus 4	tegument protein/FGARATc	IEDB
51	AQQSYERL	4.307	Mus musculus	formin binding protein 1-like isoform 1	IEDB
52	TTLIFQKL	4.289	Mus musculus	reticuloendotheliosis oncogene	IEDB
53	TGYNFQRV	4.272	Mus musculus	pleiotropic regulator 1	IEDB
54	TRIAYERM	4.250	Influenza A virus (A/Anas acuta/Primorje/695/1976(H2N3))	Nucleoprotein	IEDB
55	SIYQYVRL	4.247	Vaccinia virus WR	94 kDa A-type inclusion protein	IEDB
56	STFSFTKV	4.241	Mus musculus	chr2 synaptotagmin	IEDB
57	TSAHFARL	4.234	Mus musculus	ankyrin repeat domain 13a	IEDB
58	SALVFTRL	4.216	Mus musculus	kidney predominant protein NCU-G1	IEDB
59	TSIAFKNI	4.216	Mus musculus	MAP/microtubule affinity-regulating kinase 1	IEDB
60	RISRFANL	4.194	Vaccinia virus WR	Protein A51	IEDB
61	KSMDVRRI	4.187	Duck hepatitis B virus	presurface protein	IEDB
62	KTPSFPNI	4.148	Hepatitis B virus alpha1	P protein	IEDB
63	ISLEFRNL	4.148	Mus musculus	farnesyl diphosphate farnesyl transferase 1	IEDB
64	HVYYFAHL	4.108	Mus musculus	very large inducible GTPase 1	IEDB
65	TNMTYEKM	4.107	Mus musculus	ets variant gene 6 (TEL oncogene)	IEDB
66	SIVQFYYM	4.074	Mus musculus	metastasis-associated gene family, member 2	IEDB
67	ASITFEHM	4.074	Mus musculus	eukaryotic translation initiation factor 3, subunit H	IEDB
68	NLADFMKQ	4.070	Pseudomonas aeruginosa	Outer membrane porin F precursor	IEDB
69	EIVSFQHL	4.068	Mus musculus	AD158	IEDB
70	VIAGFNRL	4.055	Mus musculus	prefoldin 2	IEDB
71	KVLVFNFL	4.036	Mus musculus	Ano10 protein	IEDB
72	KVLHFFNV	4.030	Mus musculus	SEC24 related gene family, member D	IEDB
73	RSISFSNM	4.022	Mus musculus	neutral sphingomyelinase (N-SMase) activation associated factor	IEDB